PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7377s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 270aa    MW: 31384.1 Da    PI: 8.7273
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7377s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-111461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l+  +   G  +W+t++   g+ R +k+c++rw +yl
  Araha.7377s0003.1.p 14 KGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding56.18.7e-1867112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg +++eE+e ++ +++ lG++ W++Ia++++ gRt++++k++w++yl
  Araha.7377s0003.1.p  67 RGTFSEEEEETILTLHASLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 112
                          899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.359961IPR017930Myb domain
SuperFamilySSF466891.03E-2611108IPR009057Homeodomain-like
SMARTSM007173.2E-61363IPR001005SANT/Myb domain
PfamPF002497.8E-101461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-191568IPR009057Homeodomain-like
CDDcd001673.14E-51761No hitNo description
PROSITE profilePS5129426.0662116IPR017930Myb domain
SMARTSM007177.1E-1766114IPR001005SANT/Myb domain
PfamPF002491.0E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2669115IPR009057Homeodomain-like
CDDcd001672.17E-778112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY  60
LRPGLKRGTF SEEEEETILT LHASLGNKWS RIAKYLPGRT DNEIKNYWHS YLKKRWLKSQ  120
PQLKTQRSDR TESPSSLLSC GKINPETKTL DHVISFQKFA EKPTSLPSKD SNNNNMMNNS  180
NNLPKLFFSE WISSSNPHID YSSAFTDSKH INETQDQIDE EEVMMINNNN NYSSLEDVML  240
RTEFLQPDHE YANYYSSGDF FINNDQNYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141157107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7377s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196360.0AY519636.1 Arabidopsis thaliana MYB transcription factor (At5g52260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885944.10.0transcription factor LAF1
SwissprotQ9M0K42e-98LAF1_ARATH; Transcription factor LAF1
TrEMBLD7MRP61e-180D7MRP6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1111__AT5G52260.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-172myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]