PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1329s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 435aa    MW: 48639.9 Da    PI: 6.1962
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1329s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.84.1e-14104126426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C+f++rtG CkyG++CkF+H+
  Araha.1329s0007.1.p 104 EDCSFYMRTGSCKYGSSCKFNHP 126
                          89********************9 PP
2zf-CCCH344.8e-11152173526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++++rtG CkyG++C+F+H 
  Araha.1329s0007.1.p 152 ECKYYFRTGGCKYGESCRFSHM 173
                          6********************6 PP
3zf-CCCH36.39.3e-12195219226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C f++r+G Ck+G+ CkF+H+
  Araha.1329s0007.1.p 195 GEKECLFYMRNGSCKFGSDCKFNHP 219
                          7899********************9 PP
4zf-CCCH19.91.3e-06335360227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C ++++tG Ck+  +Ck++H++
  Araha.1329s0007.1.p 335 DQPECTYYLKTGDCKFKYKCKYHHPK 360
                          689*********************96 PP
5zf-CCCH32.91.1e-10381405226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C +++r+G+Ck+G+ C+F H+
  Araha.1329s0007.1.p 381 DQSMCTHYSRYGICKFGPACRFDHS 405
                          5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.23E-698128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46100128IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-7100127IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-11104126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-6106125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6147175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68147175IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5147174IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8152173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-6153174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347193221IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5193220IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9195219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6195220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4199218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112333361IPR000571Zinc finger, CCCH-type
SMARTSM003560.079333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5337363IPR000571Zinc finger, CCCH-type
PfamPF146080.43339359No hitNo description
PROSITE profilePS5010314.906379407IPR000571Zinc finger, CCCH-type
SMARTSM003560.019379406IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6380407IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5383405IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7385405IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSKPEDISDP NPTGPDPSRS SSDEVTVTVA DQAPSDLNHV SEELSDQFRN VGFDDSEKEL  60
SVPISVNVET DSRDLGSDQK EEEERESMIE KRMMVVYPVR PDAEDCSFYM RTGSCKYGSS  120
CKFNHPLRRK LQIGREKVRE RDEDVENPKL MECKYYFRTG GCKYGESCRF SHMKEHTSLA  180
SGPELNFLGL PIRPGEKECL FYMRNGSCKF GSDCKFNHPD PTAIGGVDSP LFRGNNGGPF  240
SPKAPSQASS TSWSSTRHMN GTGTAPFIPA MFPHNRGVSP QAPEWNGYQA SSAYPPERSV  300
LAPSTYPVNN SLAETSSFSQ YQHQMPGEEF PERPDQPECT YYLKTGDCKF KYKCKYHHPK  360
NRLPKQAPFS FNDKGLPLRP DQSMCTHYSR YGICKFGPAC RFDHSIPPTF SPSSSQTVEA  420
PQVGANGNED DSWH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1329s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864843.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLD7MNZ60.0D7MNZ6_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.8__2325__AT5G63260.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein