PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D3WC3
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 416aa    MW: 47854.4 Da    PI: 4.4598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D3WC3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEdell ++++  G g+W++ ++  g+ R++k+c++rw +yl
      Aradu.D3WC3 14 KGRWTEEEDELLTKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding551.9e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE++l+v++++ +G++ W++Ia++++ gRt++++k++w+++l
      Aradu.D3WC3  67 RGNISAEEEDLIVKLHTTFGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.854961IPR017930Myb domain
SuperFamilySSF466892.09E-2811108IPR009057Homeodomain-like
SMARTSM007172.4E-121363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001671.34E-81661No hitNo description
PROSITE profilePS5129424.762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2565116IPR009057Homeodomain-like
SMARTSM007176.9E-1766114IPR001005SANT/Myb domain
PfamPF002497.0E-1567112IPR001005SANT/Myb domain
CDDcd001671.48E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTEE EDELLTKYIQ VNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKAGLKRGNI SAEEEDLIVK LHTTFGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIYSFR  120
RATNLDTTHI GSTDTPNNVP VYPKPKPGRT SRWAMKKNKT YIHNNKGNNN NNNNNNNIHN  180
NQNNQKDEIA LRQLSPREKE DDAVPTPPTP SLESEGFCNT VEDLMVLDLD PNNNNNNGVE  240
KEEEVEEKEK EKEKVQCPTT YEKEKKDTLL GPYDEQVEDL TNNINNNGGG ALSLDDMLDN  300
FMLEEIVCGV HNLNEDIEIN NNNNNNNNNN NNNNSEEWNN LGLDEYLDWE SVMEFMNNNN  360
NNSESSEGCY LEQKENLLTW LWKDDDDWES DCMKLGENMD SSEKQNDDDV VAWFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-22121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.D3WC3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015938752.20.0transcription factor MYB111
TrEMBLA0A445BNQ30.0A0A445BNQ3_ARAHY; Uncharacterized protein
STRINGGLYMA02G01740.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-72myb domain protein 111