PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.1UT3Z
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 296aa    MW: 32707.8 Da    PI: 9.2175
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.1UT3ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18220253134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C +t+Tp+WR+gp g+ktLCnaCG++yr+ +
  Aradu.1UT3Z 220 CMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGR 253
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-15214264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.807214250IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-15217277No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14218251IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.91E-15219266No hitNo description
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
PfamPF003202.8E-16220253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKDCWFLDNN LNGVSDEVFD VVGFFDFPIE DVEDDAVEED WGAQFKQLEE PSLGVFSVSP  60
SGLSDKTKNE NPKLGRSIST PVADPARPTY GNTIRNQNVS FNGKRVPKFQ TYSPVSVFES  120
SSSSSVENSN FDLPVIPVKR PRGKRRPLSS FSLLLSVPFV SNSPKGEAND FSGSNLQTQA  180
DGKLISSLKK KQRSKDLPLL SDHTEKKGSA LQGSVTHRKC MHCEVTSTPQ WREGPMGPKT  240
LCNACGVRYR SGRLFPEYRP AASPTFVPSL HSNSHRKVIE MRSRTATETL KGSSML
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.1UT3Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020992899.10.0GATA transcription factor 11 isoform X1
TrEMBLA0A445AAA70.0A0A445AAA7_ARAHY; Uncharacterized protein
STRINGGLYMA12G08131.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-39GATA family protein