PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G003900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 574aa    MW: 62728.1 Da    PI: 5.5657
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G003900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.75.7e-1391995621374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPil 91 
                        lv++Ll+cAea+++++++la +l++++  la +++ +m+++a++f+eALa+r++r        + p++t +++s++el  l+l f+e++P+l
  Aqcoe3G003900.1.p 199 LVHTLLACAEAIQQENFQLAGTLVKQVGLLAISQAGAMRKVATHFAEALARRIYR--------FYPEDTLDSSSISEL--LELhFYETCPYL 280
                        689****************************************************........445554444444443..3334******** PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                        kf+h+taNqaIlea++ge++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+T++g+p+++++++l+++g rLa++Ae+++++fe++ +va
  Aqcoe3G003900.1.p 281 KFAHFTANQAILEAFQGESHVHVIDFSMKQGIQWPALIQALALRPGGPPTFRLTAIGPPQPDNTDTLQQVGCRLAHLAETVHIEFEYRSFVA 372
                        ******************************************************************************************** PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        ++l+d++ e+L++++gEa+aVn+v++lhrll++++++e     vL+ +++++Pk+v++veqea+hn++ Fl+rf+e+l+yys+lfdsle + 
  Aqcoe3G003900.1.p 373 NSLADINAEMLNLRSGEAVAVNSVFELHRLLARPGAIER----VLNSIRRMKPKIVTIVEQEANHNGSVFLDRFTESLHYYSTLFDSLEGGG 460
                        ***********************************9999....*********************************************6654 PP

               GRAS 276 p.res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364
                        +   s +e++++++++lg++i+nvvaceg er+erhetl++Wr r+++aGF+pv+l+++a kqa++ll+ ++ + gyrvee++g+l+lgW++
  Aqcoe3G003900.1.p 461 GgGGStSEDQMMSEVYLGKQICNVVACEGLERVERHETLSQWRIRMGSAGFNPVHLGSNAFKQASMLLSLFGgVAGYRVEENQGCLMLGWHT 552
                        30344699************************************************************************************ PP

               GRAS 365 rpLvsvSaWr 374
                        rpL+++SaW+
  Aqcoe3G003900.1.p 553 RPLIATSAWK 562
                        *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.2E-3550118IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.0E-3350124No hitNo description
PROSITE profilePS5098567.358173541IPR005202Transcription factor GRAS
PfamPF035142.0E-136199562IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MKREHQQQSS NSSTVTGSAS AAMGSVSVSG KNKMWQEEKE RSLQPDAGVD ELLAVLGYKV  60
KTSDMADVAQ KLEQLEMAMG TVQETEIISH LSSDTVHFNP SDLSTWVQSM LSEINPLPNS  120
DLISSSSSQH IDDPVTVLAT QSCSFQDLGS DDLRVIPGGA ICAPEREKKR LKPSSPTQSS  180
SALTRPVILV DSQENGIRLV HTLLACAEAI QQENFQLAGT LVKQVGLLAI SQAGAMRKVA  240
THFAEALARR IYRFYPEDTL DSSSISELLE LHFYETCPYL KFAHFTANQA ILEAFQGESH  300
VHVIDFSMKQ GIQWPALIQA LALRPGGPPT FRLTAIGPPQ PDNTDTLQQV GCRLAHLAET  360
VHIEFEYRSF VANSLADINA EMLNLRSGEA VAVNSVFELH RLLARPGAIE RVLNSIRRMK  420
PKIVTIVEQE ANHNGSVFLD RFTESLHYYS TLFDSLEGGG GGGGSTSEDQ MMSEVYLGKQ  480
ICNVVACEGL ERVERHETLS QWRIRMGSAG FNPVHLGSNA FKQASMLLSL FGGVAGYRVE  540
ENQGCLMLGW HTRPLIATSA WKLGPVADLV EFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6819456114378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274729.10.0PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2G5C5M40.0A0A2G5C5M4_AQUCA; Uncharacterized protein
STRINGAquca_091_00032.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein