PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G393600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 257aa MW: 29201.1 Da PI: 9.4643 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.9 | 5.1e-17 | 201 | 235 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l Aqcoe2G393600.2.p 201 CLHCLSEKTPQWRAGPLGPKTLCNACGVRYKSGRL 235 99*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.71E-13 | 193 | 247 | No hit | No description |
SMART | SM00401 | 5.4E-15 | 195 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.044 | 195 | 231 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.5E-13 | 198 | 233 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.44E-14 | 200 | 250 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 201 | 226 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.8E-15 | 201 | 235 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MTFSSLPLFL KKKNKNKSPR KLEVFLLSFF LMRMESLESA ALTFETLLDF PSDIDEEPDN 60 NDDDNNIKNP SLSLLTNNQQ INSAELTISH SDAHLHPFPV LEEELEWLNE NSFPDIDTFL 120 SVKPNSNNVA KDQSPVSVLG NSSSSLRHHP VQARSKRRRR RRSSFSDLIG QQWWVSYEPK 180 IKKKNVGATR MSMTSSSGRR CLHCLSEKTP QWRAGPLGPK TLCNACGVRY KSGRLLPEYR 240 PANSPTFSDI RYNDLM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 161 | RSKRRRRRR |
2 | 155 | 160 | KRRRRR |
3 | 155 | 161 | KRRRRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264014.1 | 5e-50 | PREDICTED: GATA transcription factor 1 | ||||
TrEMBL | A0A2G5CXZ6 | 1e-158 | A0A2G5CXZ6_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_034_00184.1 | 1e-159 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-27 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G393600.2.p |