PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco015741.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

TCP

Protein Properties

Length: 316aa MW: 32550.7 Da PI: 6.6128

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015741.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.4	1.5e-35	69	147	6	84
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84 r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl a+pai ++tgt++ +a ++++++ + + Aco015741.1 69 GRTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLHHAEPAIVAATGTGTVPAIATTSVDGALKFPT 147 59**********************************************************8888855533333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.374	71	125	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.9E-29	71	306	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MMDSSHSGKK DKPGGGEDGG HQRAIMPKPE AAAMGLAAVP KAEPMEVMGT NIQMMRGAGA 60 GAGAGAAAGR TKDRHTKVEG RGRRIRMPAA CAARIFQLTR ELGHKSDGET IRWLLHHAEP 120 AIVAATGTGT VPAIATTSVD GALKFPTHAP SPSPSPSSSA AGDKRRKLQP SRVSGIGAAA 180 GYYTIHDPLL PGGGAISISA GLAPILAGAG AGWVIPPGAL WMIPPPHAVA AAAAAAAAPG 240 PSTLWALPPG SQIVNFAAAE PKSPKSPKQQ QQQQQQQREL QLMAEPAKDR RKGEDEEEKE 300 EEEEEEEEEE SGAEE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00635	PBM	Transfer from PK14653.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020096734.1	0.0	transcription factor PCF2-like
Swissprot	A2YXQ1	4e-55	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	4e-55	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A2H3X0J7	1e-80	A0A2H3X0J7_PHODC; transcription factor PCF2-like
STRING	XP_008776516.1	2e-81	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	6e-41	TCP family protein

Link Out ? help Back to Top
Phytozome	Aco015741.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]