PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 32455.1 Da PI: 9.559 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +grW+AeIrdp++ rkr++lg+f+taeeAa ++ a+ +l+g Aco012562.1 124 RFRGVRRRP-WGRWAAEIRDPTQ---RKRVWLGTFDTAEEAATVYDSAAIRLKG 173 79*******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.7E-47 | 10 | 292 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.71E-30 | 123 | 182 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-22 | 124 | 182 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 124 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-39 | 124 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-13 | 124 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.698 | 124 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDPSRCSGMG RDEAEFSDHV VALRKTIRSA GRSRSAPRIV RIYVADPDAT DSSSGDDEPR 60 RLLPRRRWRR RRRVRRHVRE IEIGVAPAPP APAPVPRRRG VKVSRPLEKE AEEGCGGGGG 120 GEKRFRGVRR RPWGRWAAEI RDPTQRKRVW LGTFDTAEEA ATVYDSAAIR LKGPNAVTNF 180 PAPDPPSTSP NPNPNPNPNP NPNDAAPSNG DAASNRSPTS VLRYTEEGTT APFAPFLDGE 240 TDPFGFGLGF PLPLETPFPA PFHLTDFYGP QRHFWEAEFG EFDADVFAQE IAAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 112 | 181 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 74 | RRRWRRRRRVR |
2 | 65 | 72 | RRWRRRRR |
3 | 68 | 75 | RRRRRVRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020101247.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15640 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 4e-18 | cytokinin response factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Aco012562.1 |