PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002526.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 368aa    MW: 41266.6 Da    PI: 4.7411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002526.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+lv++++ +G g+W++ ++  g+ R++k+c++rw +yl
      Aco002526.1 14 KGRWTEEEDEILVKYITTHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.62.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e +v++++ lG++ W++Ia +++ gRt++++k++w+++l
      Aco002526.1  67 RGNISQEEEEMIVKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129418.201961IPR017930Myb domain
SuperFamilySSF466894.77E-2911108IPR009057Homeodomain-like
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001678.67E-101661No hitNo description
PROSITE profilePS5129425.47962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002494.8E-1567112IPR001005SANT/Myb domain
CDDcd001671.56E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTEE EDEILVKYIT THGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SQEEEEMIVK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKLHNFR  120
KIEGNSGVKD GEESTVVNLE SLPDGSRRRG GRSTAKSNTK GGESSKRAKR SEKHSKKEKR  180
SEEIVVSPAT SQAQSMVLDP CSNNNNNNNS SNNNQASSVT FEGFDEPMLG PNEEMVSGLL  240
SPSSPLGSDL LKMEALLWGA SEEREGDSAL VLNGDQRESE PLVHNEEREN EEVVSTQVES  300
VLDWDLRGME EKLWDEEGEM WSWMWDGHDD EIINGSEVQV GMQGMEGNDY SEEPFSNWLL  360
KEAVTET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-23121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-231211625128MYB TRANSFORMING PROTEIN
1mse_C2e-23121162105C-Myb DNA-Binding Domain
1msf_C2e-23121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086219.10.0myb-related protein 330-like
TrEMBLA0A199VK040.0A0A199VK04_ANACO; Transcription factor MYB12
STRINGXP_008786362.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.17e-75myb domain protein 12