PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn193381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TCP | ||||||||
Protein Properties | Length: 271aa MW: 28806 Da PI: 9.1649 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.2 | 1.3e-37 | 29 | 121 | 2 | 91 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaa 91 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq a+pai+++tgt++++as+ a+ s+s+++ss++ +++ Achn193381 29 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQHAEPAIIAATGTGTIPASALAAAGGSVSHHASSISaglHQN 121 789******************************************************************888666666665555555454222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.9E-30 | 34 | 131 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.008 | 35 | 89 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MTENNKPAEI KDFQIVIADK EDTTKMQLAP KRSSNKDRHT KVEGRGRRIR MPALCAARIF 60 QLTRELGHKS DGETIQWLLQ HAEPAIIAAT GTGTIPASAL AAAGGSVSHH ASSISAGLHQ 120 NMDDLSGQSR ANWSMVGGNL NLGRPHLATA AAIWPTAGFG FQSSSSSSGP STANLGSEGS 180 NYLQRIGFPG FEFPGNNMGS MTFASILSGS GHQQVPGLEL GLSQDGPVGI LNSQVFSQIY 240 QQMGQARMHQ QHHQHNQQSS PKDDSQGSRQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015570980.1 | 1e-134 | transcription factor TCP20 | ||||
Refseq | XP_015570982.1 | 1e-134 | transcription factor TCP20 | ||||
Refseq | XP_025012040.1 | 1e-134 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 2e-83 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2R6RJZ8 | 0.0 | A0A2R6RJZ8_ACTCH; Transcription factor like | ||||
STRING | XP_002512905.1 | 1e-134 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 8e-78 | TCP family protein |