PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA55G00025 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 30137.4 Da PI: 9.0174 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.1 | 8.5e-13 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l + +G +W+t++ g+ R +k+c++rw +yl AA55G00025 16 KGLWSPEEDQKLSSFIFSHGHACWTTVPIQAGLQRNGKSCRLRWINYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+ ++ ++ lG++ W++Ia++++ gRt++++k++w++yl AA55G00025 69 RGTFSSDEENTILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 114 899*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 11 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.524 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-26 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-8 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-11 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.83E-7 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.454 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-9 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGKTKSGERP KQRQRKGLWS PEEDQKLSSF IFSHGHACWT TVPIQAGLQR NGKSCRLRWI 60 NYLRPGLKRG TFSSDEENTI LTLHSSLGNK WSRIAKYLPG RTDNEIKNYW HSYLKKKWLK 120 THPKTETQRS SSSSSSSSLL ASGTRNLEAE TETLDRLISF KNPSLSSEMN NFPNLFFSDW 180 ITSSDPQINF SSTLQDSKKI NYKPEEIIHD YDRFHYEEMM VNNNFSDFIF ATDIQQSDEC 240 SHYQNSSAQF FLNSNDGNYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 16 | 117 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA55G00025 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444657.1 | 1e-111 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 2e-85 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A1J3CQB5 | 1e-109 | A0A1J3CQB5_NOCCA; Transcription factor LAF1 | ||||
STRING | XP_010444657.1 | 1e-111 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 1e-105 | myb domain protein 19 |
Publications ? help Back to Top | |||
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