PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00133
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 262aa    MW: 29815.7 Da    PI: 4.3575
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00133genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-193285356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+++++++q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  AA46G00133 32 KKRRLSNNQVKALEKNFEIENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 85
                56689************************************************9 PP
2HD-ZIP_I/II128.52.8e-4131123193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls++qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy++Lk+++d+l+++ e L++++++L +e+++
   AA46G00133  31 EKKRRLSNNQVKALEKNFEIENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYASLKTQFDSLQHNFEILRRDNDSLLQEISK 123
                  69*************************************************************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.5242787IPR001356Homeobox domain
SuperFamilySSF466891.07E-183089IPR009057Homeodomain-like
SMARTSM003898.3E-183091IPR001356Homeobox domain
PfamPF000462.8E-163285IPR001356Homeobox domain
CDDcd000861.24E-153288No hitNo description
Gene3DG3DSA:1.10.10.603.5E-203494IPR009057Homeodomain-like
PRINTSPR000316.6E-65867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000316.6E-66783IPR000047Helix-turn-helix motif
PfamPF021836.9E-1587128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLERFQEEDQ DQEQDQEMII EVLERESSCA EKKRRLSNNQ VKALEKNFEI ENKLEPERKV  60
KLAQELGLQP RQVAVWFQNR RARWKTKQLE KDYASLKTQF DSLQHNFEIL RRDNDSLLQE  120
ISKLKSKLTG EEEEEEDNNL TPESEISVKK EVISNQNQNS TEPSSPPQLL EHSGGFNYRS  180
ITEFLPISTA AGAAAGAAAG SSDSSESSAV LNELSGGGIF QFVKTENSEE HDDFLSGEEA  240
CGFFSDEQPP SLHWYSAVDH WT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411810.11e-106homeobox-leucine zipper protein ATHB-16
SwissprotQ940J11e-103ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A078GJS31e-105A0A078GJS3_BRANA; BnaA04g12880D protein
TrEMBLE4MW351e-105E4MW35_EUTHA; mRNA, clone: RTFL01-02-C17
TrEMBLV4MKN01e-105V4MKN0_EUTSA; Uncharacterized protein
STRINGXP_006411810.11e-105(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-98homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]