PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA22G00101
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 325aa    MW: 34260 Da    PI: 6.6124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA22G00101genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11177222555
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  AA22G00101 177 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 222
                 99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-13170226No hitNo description
SuperFamilySSF474593.93E-17170231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.409172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9177222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMNSSLLTPS SSSSSHIQTP STFDHEDFLD HIFSSSPWPS VDDTTPQPPP PSDSSLVGFH  60
GHDVDSRQQQ HHQIMMMPLS HHPTDVVDPS VHALYNGFSS SAAAGSLHSP PNHSLPFHIP  120
QGSGSGGMMN QTQSQTQTQS QSQGPSVSTT TGGGTTVAPP QSRTKVRARR GQATDPHSIA  180
ERLRRERIAE RMKALQELVP NGNKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAASVS  240
SQISEGGGGG GGGERSQAGG GGSTAGNSND GLTMTEHQVA KLMEEDMGSA MQYLQGKGLC  300
LMPISLATAI STATCHSRNP LLDAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA22G00101
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763701e-108AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankAK1763901e-108AK176390.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-10-C06.
GenBankBT0265121e-108BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294501.11e-152transcription factor bHLH66 isoform X1
SwissprotQ9ZUG91e-143BH066_ARATH; Transcription factor bHLH66
TrEMBLR0HCZ61e-150R0HCZ6_9BRAS; Uncharacterized protein
STRINGXP_006294501.11e-151(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-99LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]