PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK44024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29397.8 Da PI: 6.4082 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ +++++G g+W++ + + g++R++k+c++rw++yl KFK44024.1 14 KGEWTAEEDQKLIVYINEFGIGDWRSLPPKAGLRRCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.5 | 7.6e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE+e +++ ++ lG++ W++Ia+ mg +Rt++++k++w++ KFK44024.1 67 RGKFTPEEEENIIKHHAVLGNR-WAAIAKQMG-NRTDNDIKNHWNSC 111 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.822 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.25E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.86E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.363 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-10 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGKTTWFDVD GMRKGEWTAE EDQKLIVYIN EFGIGDWRSL PPKAGLRRCG KSCRLRWLNY 60 LRPGIRRGKF TPEEEENIIK HHAVLGNRWA AIAKQMGNRT DNDIKNHWNS CLKKRLKRNG 120 IDPMTHKPII TNLTVKTTYE ECGHSSATES PSSSSSGSAR VLNKLAASIS SRQHSDDRIK 180 SIMSDLKNRS SDQDDKERES RMDQNVGGGQ EDDFVMWDEE EIRRFMETDD DVLEYETTTY 240 ESVLYGNTHM LDDLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 9 | 116 | 2 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK44024.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013602606.1 | 1e-128 | PREDICTED: transcription factor MYB34-like isoform X1 | ||||
Refseq | XP_013602607.1 | 1e-128 | PREDICTED: transcription factor MYB34-like isoform X2 | ||||
Swissprot | O64399 | 1e-59 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | A0A087HPH2 | 0.0 | A0A087HPH2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HPH2 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 1e-115 | myb domain protein 47 |