PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK30334.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 30392.9 Da PI: 5.4729 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l+ +++++G g+W++ + + g++R++k+c++rw++yl KFK30334.1 14 KGEWTAEEDEKLIAYINKHGIGDWRSLPIRAGLRRCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+e +++ ++ lG++ W++Ia+ m +Rt++++k++w++ KFK30334.1 67 RGKFTPEEEEDIIRHHAVLGNR-WAAIAKQME-NRTDNDIKNHWNS 110 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.686 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.8E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.835 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGKTTWFDND GMRKGEWTAE EDEKLIAYIN KHGIGDWRSL PIRAGLRRCG KSCRLRWLNY 60 LRPGIKRGKF TPEEEEDIIR HHAVLGNRWA AIAKQMENRT DNDIKNHWNS SLKKRLQRKG 120 LDPMTHEPII NNFTVKTTNE VYGNSSATTS SMENPSSSYC KSARLLNKIA ASVSSRQHSV 180 DRIRKIMSDL KIISNDQDYE ERETKMDENV SDGQENEFLM WDEEEIERFI ESTDDVMEYE 240 TTLYESVFYE NTHMLDDFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK30334.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013602606.1 | 1e-125 | PREDICTED: transcription factor MYB34-like isoform X1 | ||||
Refseq | XP_013602607.1 | 1e-125 | PREDICTED: transcription factor MYB34-like isoform X2 | ||||
TrEMBL | A0A087GKD2 | 0.0 | A0A087GKD2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GKD2 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 1e-113 | myb domain protein 47 |