PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28041.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 413aa    MW: 46107.2 Da    PI: 8.0008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28041.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.49.7e-1377100326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  e C f++rtG CkyG++CkF+H+
  KFK28041.1  77 AEDCLFYMRTGSCKYGSTCKFNHP 100
                 689********************8 PP
2zf-CCCH30.27.6e-10129148625
                 -SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                 C++++rtG CkyG++C+F+H
  KFK28041.1 129 CKYYFRTGGCKYGESCRFSH 148
                 ******************** PP
3zf-CCCH35.31.9e-11171195226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C+f++r+G Ck+ + CkF+H+
  KFK28041.1 171 GEKECPFYMRNGSCKFVSDCKFNHP 195
                 7899********************9 PP
4zf-CCCH201.2e-06314339227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C +f++tG Ck+  +Ck++H++
  KFK28041.1 314 DQPECTYFLKTGDCKFKYKCKYHHPK 339
                 689*********************96 PP
5zf-CCCH345e-11360384226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C +++r+G+Ck+G+ C+F H+
  KFK28041.1 360 DQSMCTNYSRYGICKFGPACRFDHS 384
                 5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.85974102IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-674101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-675103IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-1077100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-58099IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347123151IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6124152IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7128148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6129151IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314169197IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9171195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-5171196IPR000571Zinc finger, CCCH-type
SMARTSM003560.051312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206312340IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5316342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502358386IPR000571Zinc finger, CCCH-type
SMARTSM003560.013358385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6359386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5362384IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSKPDPNPSK PDPKPPSQSC ISDNDPVADR APPSDLNDQF GEMSVPIEGN GEMGSKEEEE  60
GSEREKRMIS YPVRPGAEDC LFYMRTGSCK YGSTCKFNHP APRKRQIGRE KVREREREED  120
VENPRSMDCK YYFRTGGCKY GESCRFSHAK EQTSLPSRPE LNFLGLPIRP GEKECPFYMR  180
NGSCKFVSDC KFNHPDPTAI GGVDSPLFRG NNGGSVGSFS PKAPSQASST SWSSTRHMNG  240
TGTAPFIPVM FPQNRGVSSQ TSDWNGYQAS SVYPQERSVL PPPTYPVNNS LSETSSFSQY  300
QQQMPVEEFP ERPDQPECTY FLKTGDCKFK YKCKYHHPKN RLPKKAPSSF NDKGLPLRPD  360
QSMCTNYSRY GICKFGPACR FDHSIPPTFS SSSSQAVDAP QASGNGNENN NWN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394295.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A087GDT90.0A0A087GDT9_ARAAL; Uncharacterized protein
STRINGA0A087GDT90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein