PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g026135m | ||||||||
Common Name | CISIN_1g021503mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 26286.5 Da PI: 9.7424 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.3e-09 | 20 | 43 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w+++ orange1.1g026135m 20 SWSLIAGRLP-GRTDNEIKNYWNTH 43 7*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.502 | 1 | 48 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.32E-8 | 18 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-13 | 19 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.8E-7 | 20 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.63E-6 | 21 | 44 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:1903086 | Biological Process | negative regulation of sinapate ester biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MKKMNSLSNS IASLVTSKSS WSLIAGRLPG RTDNEIKNYW NTHIRRKLLN RGIDPATHRP 60 LNEPAVPVAA AQSATTAAPA DVAAAAAAAA TTTTTISFSA AAAAKEDIKR EKRTIGFVCK 120 NEKQPYHHHN HHRHRQQQQV IVKEEEVTCP DLNLELRISP PSSADLHQQQ PLIKTGGRSS 180 SLCLACSLGL QNSKGCSCNN NNNNNTNSMI SSSNTSSSSS SSTCYDFLGL KSGVLDYRSL 240 EMK* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00479 | DAP | Transfer from AT4G38620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006486752.1 | 1e-104 | myb-related protein 308 | ||||
TrEMBL | A0A067FXU6 | 1e-180 | A0A067FXU6_CITSI; Uncharacterized protein | ||||
STRING | XP_006486752.1 | 1e-104 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16720.1 | 1e-25 | myb domain protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g026135m |