PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00011.1.g02540.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 26519.8 Da PI: 8.7234 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.4 | 1.2e-32 | 168 | 226 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ Zjn_sc00011.1.g02540.1.sm.mk 168 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 226 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-33 | 154 | 226 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-28 | 162 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.449 | 163 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-38 | 168 | 227 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-26 | 169 | 226 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MENQLQGDVD EAHALPSFPY FAAPSPPLGP PSLSSDDHHQ HGALAADLQQ QQQQPVAAAC 60 NSLLPLGGAG NQLQAPPRMV LPTMVDWSSL LQQASLMTPA VPGLQEAAAQ ADQSGENHCG 120 EVGASGSGSA SGSKESKAGG KVGAGRSGKK KVSRPRFAFQ TRSVNDILDD GYRWRKYGQK 180 AVKNSAHPRS YYRCTHHTCN VKKQVQRLAK DTSIVVTTYE GVHNHPCEKL MEALSPILKQ 240 LQFLSQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-24 | 158 | 225 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-24 | 158 | 225 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108909 | 1e-122 | AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence. | |||
GenBank | AY341845 | 1e-122 | AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds. | |||
GenBank | AY870607 | 1e-122 | AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969857.1 | 1e-111 | probable WRKY transcription factor 56 | ||||
TrEMBL | K3XLH8 | 1e-110 | K3XLH8_SETIT; Uncharacterized protein | ||||
STRING | Si002751m | 1e-111 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 2e-57 | WRKY DNA-binding protein 56 |