PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016460290.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 443aa MW: 45584.4 Da PI: 6.508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016460290.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	236	281	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_016460290.1 236 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 281 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.07E-13	229	285	No hit	No description
SuperFamily	SSF47459	5.23E-17	229	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	233	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	236	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MQAMNQYDPT SSHDDFLDQI LSSVPSSSPC WPDLSKSWDP HHHHLSPPLP PNPSSGDDHQ 60 PPPSNPLQHF QYDDQSSSFL AAKLRQHQIT GGGGGGGGTV AAAKALLLQQ QLLLSRTLAG 120 NGLRSPTGAS GDNGFLNMLG NGDQNDGVGN PANDSSVQAL FNGFTGSLGQ NSSQPQHFHH 180 PQGGTMQAQS FGATATVPAM NQTPAASGSA VGGTTPAAQP KQQRVRARRG QATDPHSIAE 240 RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP 300 LVADMSSEGR GEGNGGRGGN GTASSSNNDS MTVTEHQVAK LMEEDMGSAM QYLQGKGLCL 360 MPISLATAIS TATCHSRNPM IPNGNGGNNP LLGGGGGPAT NGGGGEAGGP SSPNLSVLTV 420 QSATIGNGGI DPSVKDATSV SEA

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MQAMNQYDPT SSHDDFLDQI LSSVPSSSPC WPDLSKSWDP HHHHLSPPLP PNPSSGDDHQ  60
PPPSNPLQHF QYDDQSSSFL AAKLRQHQIT GGGGGGGGTV AAAKALLLQQ QLLLSRTLAG  120
NGLRSPTGAS GDNGFLNMLG NGDQNDGVGN PANDSSVQAL FNGFTGSLGQ NSSQPQHFHH  180
PQGGTMQAQS FGATATVPAM NQTPAASGSA VGGTTPAAQP KQQRVRARRG QATDPHSIAE  240
RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP  300
LVADMSSEGR GEGNGGRGGN GTASSSNNDS MTVTEHQVAK LMEEDMGSAM QYLQGKGLCL  360
MPISLATAIS TATCHSRNPM IPNGNGGNNP LLGGGGGPAT NGGGGEAGGP SSPNLSVLTV  420
QSATIGNGGI DPSVKDATSV SEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ444222	0.0	DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790289.1	0.0	PREDICTED: transcription factor bHLH66-like
Refseq	XP_016460290.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	5e-94	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S3Z738	0.0	A0A1S3Z738_TOBAC; transcription factor bHLH66-like
TrEMBL	A0A1U7XTQ6	0.0	A0A1U7XTQ6_NICSY; transcription factor bHLH66-like
STRING	XP_009790289.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-71	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]