PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010942107.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 512aa MW: 52299.3 Da PI: 7.0002

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010942107.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	296	341	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_010942107.1 296 HSIAERLRRERIAERMKALQELVPNA-----NKSDKASMLDEIIDYVKFLQ 341 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	289	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-12	289	345	No hit	No description
PROSITE profile	PS50888	17.079	291	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-16	293	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.0E-9	296	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-13	297	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MQQSSREMQG MASPLNGISS SAGAAAAAAA AAAQISLQDL HDGHRQQQIQ NAGMQVPASH 60 FGHSAGGHDD FLDQMLCNLP SSWPDLGNPK SPWDLTSSSN PNGLAGKSPE DSAAAEGLQY 120 VPYDESVLLA SQLRQHQISG GSSPAGKQPM LLQLNQHHQQ QQQMLLQGMG RSPVVAGGGD 180 SGLLPLPLSL GSGGSADSRL LVDRSRDEVD PSFKSPNPTG GEGLYNGFGG SLQRAAEAAT 240 QQHFHHPQGA SMPARNFGGS PAAGVGRSAA AVSPGGGTAP PRQRVRARRG QATDPHSIAE 300 RLRRERIAER MKALQELVPN ANKSDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP 360 LVADMSSEGQ SGRGGSNGAA GNDSLTVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA 420 SAISATCHPR PAAGGVGAAG NGGAAHHLNP GLIPVPPPPN HGNAAAGTAG GGGDAPSSPS 480 MSVLTVQSAI ANGADNDVSR PFVKDAASVS KP

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MQQSSREMQG MASPLNGISS SAGAAAAAAA AAAQISLQDL HDGHRQQQIQ NAGMQVPASH  60
FGHSAGGHDD FLDQMLCNLP SSWPDLGNPK SPWDLTSSSN PNGLAGKSPE DSAAAEGLQY  120
VPYDESVLLA SQLRQHQISG GSSPAGKQPM LLQLNQHHQQ QQQMLLQGMG RSPVVAGGGD  180
SGLLPLPLSL GSGGSADSRL LVDRSRDEVD PSFKSPNPTG GEGLYNGFGG SLQRAAEAAT  240
QQHFHHPQGA SMPARNFGGS PAAGVGRSAA AVSPGGGTAP PRQRVRARRG QATDPHSIAE  300
RLRRERIAER MKALQELVPN ANKSDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP  360
LVADMSSEGQ SGRGGSNGAA GNDSLTVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA  420
SAISATCHPR PAAGGVGAAG NGGAAHHLNP GLIPVPPPPN HGNAAAGTAG GGGDAPSSPS  480
MSVLTVQSAI ANGADNDVSR PFVKDAASVS KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	305	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010942107.1	0.0	transcription factor bHLH66 isoform X1
Swissprot	Q9ZUG9	4e-78	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2H3YJQ3	0.0	A0A2H3YJQ3_PHODC; transcription factor bHLH66
STRING	XP_008799645.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	8e-54	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]