PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093338.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 489aa    MW: 51586.3 Da    PI: 6.3422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093338.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-12279324555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  XP_010093338.1 279 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 324
                     99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17272334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-13272328No hitNo description
PROSITE profilePS5088817.39274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16276333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MQPCSREMQG MSSLLNASSS QISLEDLQQQ QSQSSSSIQG SQIHQIHASH YEPPPSHDDF  60
LEQMLSTLGP PSWADLGGQP GKVPWDTTTT VPDGNGPNNK PRDDETPDNV PAFPFDESAN  120
LASKFRNHQI SGGCGSKSAA AAAAAMMLQH QLMLARGGGA AGAGETGLVP MPLSLSNGEF  180
DRSQNDVVDG SSSDVTLRFK HCTMDSALDL WPALVRRRTS FTILRHAIDF GGSMAAQQNY  240
GASGPAMNQT QAPSGSSGAQ PAQPRPRVRA RRGQATDPHS IAERLRRERI AERMKALQEL  300
VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSP EGNGGDCIQA  360
NSNGGTHGRT SNGNTNNNQT ASSNDTMTVT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS  420
LATAISTATC HTRNPMINNN HHHPPIGSNG EGPSSPSMSV LTVQSATTGN GAAAADGSVK  480
DAASVSQPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093338.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8364326e-67KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019368.10.0transcription factor bHLH66
TrEMBLW9QTC80.0W9QTC8_9ROSA; Uncharacterized protein
STRINGXP_010093338.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-58LJRHL1-like 1