PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009596056.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 441aa MW: 45281.1 Da PI: 6.4446

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009596056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	234	279	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_009596056.1 234 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 279 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.04E-13	227	283	No hit	No description
SuperFamily	SSF47459	5.23E-17	227	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	231	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	234	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	235	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MQAMNQFDPT SSHDDFLDQI LSSVPSSSPC WPDLSKSWDP HHHLSPPLLP NPNSGDDHQP 60 PPNPLQHFQY DDQSSSFLAA KLRQHQITGG GGGGGGAVAA AKALLLQQQL LLSRTLAGNG 120 LRSPTGASGD NGFLNMLGNG DQNDGVGNPA NDSSVQALFN GFTGSLGQNS SQPQHFHHPQ 180 GGSMQAQSFG APATAPAMNQ TPAASGSAGG VTTPAAQPKQ QRVRARRGQA TDPHSIAERL 240 RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV 300 ADMSSEGRGE GNGGRGGNGT ASSSNNDSMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP 360 ISLATAISTA TCHSRNPMIP NGNGGNNPLL GGGGGPATNG GGGEAGGPSS PNLSVLTVQS 420 ATIGNGGIDP SVKDAASVSE A

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MQAMNQFDPT SSHDDFLDQI LSSVPSSSPC WPDLSKSWDP HHHLSPPLLP NPNSGDDHQP  60
PPNPLQHFQY DDQSSSFLAA KLRQHQITGG GGGGGGAVAA AKALLLQQQL LLSRTLAGNG  120
LRSPTGASGD NGFLNMLGNG DQNDGVGNPA NDSSVQALFN GFTGSLGQNS SQPQHFHHPQ  180
GGSMQAQSFG APATAPAMNQ TPAASGSAGG VTTPAAQPKQ QRVRARRGQA TDPHSIAERL  240
RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV  300
ADMSSEGRGE GNGGRGGNGT ASSSNNDSMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP  360
ISLATAISTA TCHSRNPMIP NGNGGNNPLL GGGGGPATNG GGGEAGGPSS PNLSVLTVQS  420
ATIGNGGIDP SVKDAASVSE A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	243	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ444222	0.0	DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018625009.1	0.0	PREDICTED: uncharacterized protein LOC104092228
Swissprot	Q9ZUG9	5e-92	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S3XWA3	0.0	A0A1S3XWA3_TOBAC; transcription factor bHLH66-like
STRING	XP_009596056.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-69	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]