PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021961-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bZIP
Protein Properties Length: 199aa    MW: 23095.8 Da    PI: 6.2321
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021961-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.92.9e-1584142563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN+ L+++l++ ++  +++ +e+
  WALNUT_00021961-RA  84 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIEKLNHVTECHDRVLQEN 142
                         79*********************************************999888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-1680144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6882133IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.98E-1384133No hitNo description
PfamPF001707.4E-1384142IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-1284156No hitNo description
CDDcd147021.55E-2085136No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MLPAEITGIH YLAQETPIPI PTGFGMMQSN TPDHLYFNRF LSNLPNSLFP SQGYELNPQY  60
SCISNNSSTS DEAEEHQLSI IDERKQRRMI SNRESARRSR MRKQKHLDEL WSQVVRLRTE  120
NHNLIEKLNH VTECHDRVLQ ENARLKEETS DLRQMFTSLQ IDSPYTATFR DLEEVPCNTA  180
HLRAESSNQS ISNSVDLLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808412.11e-147PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC25e-39BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2I4DMQ61e-146A0A2I4DMQ6_JUGRE; basic leucine zipper 43-like
STRINGPOPTR_0008s11260.13e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-50basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]