PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo30G0004800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 306aa    MW: 32114.5 Da    PI: 8.6263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo30G0004800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-105883127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +kt+lC  f++ GtC+y  +C+FaHg+
  Spipo30G0004800 58 FKTKLCGKFRA-GTCPYVTTCNFAHGM 83
                     69*********.*************95 PP
2zf-CCCH24.64.4e-08121146126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk ++C+ f+ +  C+yGd+C+F H+
  Spipo30G0004800 121 YKGRRCKKFYTGEGCPYGDSCTFLHD 146
                      899********66************7 PP
3zf-CCCH43.26.4e-14177202126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  Spipo30G0004800 177 WKTRICNKWETTGYCPFGSKCHFAHG 202
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-75688IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015783IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5775784IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-145790IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-75883IPR000571Zinc finger, CCCH-type
SMARTSM003560.0051120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7120148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056120148IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5121146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-9121148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-16172206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-10173207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544176204IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-8176203IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-11177202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSRTEHRGEE AITIAVAGGE TIWAAEEDEY QSKRPRGSQG DPPGAAGRSS RSGGKIFFKT  60
KLCGKFRAGT CPYVTTCNFA HGMEELRRPP ANWHDLVAGE QHQIPTLSSS AAAAGDGERP  120
YKGRRCKKFY TGEGCPYGDS CTFLHDEESK ARESVAITVG SGGGGFAAGS TQKPTNWKTR  180
ICNKWETTGY CPFGSKCHFA HGSAELHKYG GGLVEAERRE ASSAVAAAPA AAAGSSSSKA  240
PAEPPPQPAA AASGGADVYH AGVPAGQRPP AAGGGGRRDG RRSLERWRGP GKISRIYGDW  300
IDDNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046356e-35AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0046986e-35AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149646e-35AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126166e-35CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935018.11e-112zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ36e-97C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1D1ZLM11e-112A0A1D1ZLM1_9ARAE; Zinc finger CCCH domain-containing protein 56
STRINGXP_008788660.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.15e-68C3H family protein