PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo29G0029200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 211aa MW: 22757.1 Da PI: 8.8745 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.4 | 1.9e-23 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ rqv fskRr g++KKA+ELS+LC+ae+ v++fs+ gk++ + Spipo29G0029200 9 KKIENEEARQVCFSKRRSGLFKKASELSILCGAEIGVVVFSPAGKVFSF 57 68********************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-29 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.922 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.09E-41 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 2.9E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRQKIEIKK IENEEARQVC FSKRRSGLFK KASELSILCG AEIGVVVFSP AGKVFSFGHP 60 SVETVVDRFL GEPGPGGAVV PSAAPPHPAF KDLNRQHTEL SNRLEVEKKK KEEAEKALKA 120 TGEHYWRDLD ADGLGLEELE RFRLSVDLLK GRLAQRAEKL LLEAATPAAG SAPTPGSLGE 180 FAGRNPFLVK EEGSGVVFCR GGFGLPHGLR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-17 | 1 | 75 | 1 | 75 | MEF2 CHIMERA |
6byy_B | 6e-17 | 1 | 75 | 1 | 75 | MEF2 CHIMERA |
6byy_C | 6e-17 | 1 | 75 | 1 | 75 | MEF2 CHIMERA |
6byy_D | 6e-17 | 1 | 75 | 1 | 75 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020104108.1 | 3e-57 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A199ULX0 | 3e-55 | A0A199ULX0_ANACO; Agamous-like MADS-box protein AGL61 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-25 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Spipo29G0029200 |