PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0013300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 274aa    MW: 29402.4 Da    PI: 6.7727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0013300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.2e-26121181259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK++k++++pr+Y+rCt++   gC+++k+v++s+e+p+ ++itY g+H+++
  Spipo29G0013300 121 EDGYTWRKYGQKPIKSATHPRGYFRCTHKhdqGCQATKRVQKSEENPSEFIITYAGNHTCK 181
                      8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-27109181IPR003657WRKY domain
PROSITE profilePS5081121.918115178IPR003657WRKY domain
SuperFamilySSF1182902.62E-24115181IPR003657WRKY domain
SMARTSM007741.0E-36120182IPR003657WRKY domain
PfamPF031069.8E-25121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEVGVVKDLH PGQRKSVVRE LTRGRESAIR LREMQGLSSG DGGRLAEEVV ACFTRVLAAM  60
DQGELSEVCQ RTSSASSGDW KNAASTGKRT PQLAGDGGGG AHRRRRSSSS QAWKVTSTSL  120
EDGYTWRKYG QKPIKSATHP RGYFRCTHKH DQGCQATKRV QKSEENPSEF IITYAGNHTC  180
KDAGRSPAAG AGGDDGGPFR IYFNCPSSAP SSFPSSKPEA DDDCDTDALS NLSGNGSSSD  240
FFSLPELLPV PEPMTPQFDD GVFDLDPLPF SFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21115181369OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Z0062e-62A0A1D1Z006_9ARAE; Putative WRKY transcription factor 70 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-30WRKY DNA-binding protein 70