PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo26G0007100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | WRKY | ||||||||
Protein Properties | Length: 386aa MW: 42231.5 Da PI: 4.8652 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 160 | 218 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++itY+ eHnh+ Spipo26G0007100 160 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRTDPDTLVITYTAEHNHP 218 79*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-30 | 145 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.119 | 154 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-25 | 157 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.0E-36 | 159 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-25 | 161 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MEDDGWDLQA VVRGCCGSVR STSEAVATVD PFSFLPVVAK KEKEEEDDLL RYLPEVFSTQ 60 REVHELEELC KPFFTKSFDK QQQKQLSPEG RPSSCSAAHP RPSYDGGAAS LPLQQQQQHQ 120 QHQQIRQPQV RPFSQTPRAK RRKNQQKKVV CQVPADGLSS DMWAWRKYGQ KPIKGSPYPR 180 GYYRCSSSKG CLARKQVERS RTDPDTLVIT YTAEHNHPVP THRNSLAGST RQKFPSSSSS 240 AGSAQNFAGV DGGGTPVGGS DPEPTSSKGT SSSPIYSPTA AGLSPTTPLT SSMEEELLRP 300 QRLTGQKPEG EEAEEEEEEE DDDEENLLLI GDMEILGDDD LMFMDFDQLR DTNAATAFSD 360 GFSERFGSSP HPWMPSGAAT AAGGG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-22 | 147 | 221 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 7e-22 | 147 | 221 | 6 | 80 | Disease resistance protein RRS1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661036.1 | 2e-96 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A3Q0I2D8 | 4e-95 | A0A3Q0I2D8_PHODC; WRKY transcription factor 22-like | ||||
STRING | XP_008797253.1 | 7e-96 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5358 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-55 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo26G0007100 |