PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0014800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 390aa    MW: 42889.1 Da    PI: 6.3158
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0014800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.1e-09145166426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C++f++ G Ck+Gd C +aHg
  Spipo14G0014800 145 VACPDFRK-GVCKRGDACEYAHG 166
                      68******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.8E-6141167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328142168IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-7145166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4147168IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.268176200IPR000571Zinc finger, CCCH-type
SMARTSM0035615176199IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MILGEGPRPS PMFQVPPWQI CDDPMSGVPY SIPVSGVAGG NGGDCSSFLL SEAALAALQR  60
FLPSNEPYVY EETRRGVEQE EEEAEEEDLL DSPVDAYSCD EFRMYEFKVR RCVRGRSHDW  120
TECPYAHPGE KARRRDPRKF HYSGVACPDF RKGVCKRGDA CEYAHGVFEC WLHPSRYRTQ  180
ACKDGVNCRR RVCFFAHTPE QLRVVPQAQQ QQQQQSPPVS SVLDSYFSKG LASSPTSTLM  240
SPPMSPPSDS PPLSPSGHSL RRSPAPVGSS PINGVLASLR RLQLSKAKSV PSSWGLQQVS  300
GVGSPRGVVN VRPGFCSLPT TPTAASSGGL FDEWTEPTER VESGRDLRVK IYEKLSREFS  360
MGRSHEEEDE ARAAAAMAPD VGWVSDLVM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925500.11e-141zinc finger CCCH domain-containing protein 2
SwissprotQ9M0G21e-113C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1D1XN001e-145A0A1D1XN00_9ARAE; Zinc finger CCCH domain-containing protein 2 (Fragment)
STRINGXP_010244375.11e-138(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-97C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]