PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo14G0014800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C3H | ||||||||
Protein Properties | Length: 390aa MW: 42889.1 Da PI: 6.3158 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.9 | 8.1e-09 | 145 | 166 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C +aHg Spipo14G0014800 145 VACPDFRK-GVCKRGDACEYAHG 166 68******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.8E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.328 | 142 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-7 | 145 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 147 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.268 | 176 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 15 | 176 | 199 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MILGEGPRPS PMFQVPPWQI CDDPMSGVPY SIPVSGVAGG NGGDCSSFLL SEAALAALQR 60 FLPSNEPYVY EETRRGVEQE EEEAEEEDLL DSPVDAYSCD EFRMYEFKVR RCVRGRSHDW 120 TECPYAHPGE KARRRDPRKF HYSGVACPDF RKGVCKRGDA CEYAHGVFEC WLHPSRYRTQ 180 ACKDGVNCRR RVCFFAHTPE QLRVVPQAQQ QQQQQSPPVS SVLDSYFSKG LASSPTSTLM 240 SPPMSPPSDS PPLSPSGHSL RRSPAPVGSS PINGVLASLR RLQLSKAKSV PSSWGLQQVS 300 GVGSPRGVVN VRPGFCSLPT TPTAASSGGL FDEWTEPTER VESGRDLRVK IYEKLSREFS 360 MGRSHEEEDE ARAAAAMAPD VGWVSDLVM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925500.1 | 1e-141 | zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | Q9M0G2 | 1e-113 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1D1XN00 | 1e-145 | A0A1D1XN00_9ARAE; Zinc finger CCCH domain-containing protein 2 (Fragment) | ||||
STRING | XP_010244375.1 | 1e-138 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-97 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo14G0014800 |
Publications ? help Back to Top | |||
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