PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo12G0024000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 301aa MW: 32745.9 Da PI: 6.0182 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF ++ L H+ +H Spipo12G0024000 117 YSCTSCNKSFHTHQALGGHMASH 139 99******************999 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00078 | 175 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F++ L H r+H Spipo12G0024000 175 HRCDKCGLAFPTGQALGGHKRKH 197 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.21E-6 | 115 | 144 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.6E-4 | 116 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.9E-8 | 117 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.988 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.307 | 175 | 197 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-10 | 175 | 198 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 175 | 197 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 177 | 197 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MMEAVFNLLF FANGRCYSHK TPCNFQARND RRMEDVQHFS DDGQSSNPTD STFEPEKMEM 60 CEDRDRSAET PEIPVGGDGG SGGEDQSSIF DRKGKRKNKD VEILQEPRPP SGKKMKYSCT 120 SCNKSFHTHQ ALGGHMASHK KEKQVLDGSG GGGGGEAEQA VSPTVPEVKA ATAEHRCDKC 180 GLAFPTGQAL GGHKRKHWNG HESSAFSNGA QEISSEVRYR QKLGRWERGR SSAVAPSQED 240 SSEKTEERGE LRRSWPESFN GSPTAAAAVA VVGEQNGETA APPGVIDFDL NEKPLEERES 300 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19436 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 6e-16 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Spipo12G0024000 |