PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0024000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 301aa    MW: 32745.9 Da    PI: 6.0182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0024000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047117139123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+ksF ++  L  H+ +H
  Spipo12G0024000 117 YSCTSCNKSFHTHQALGGHMASH 139
                      99******************999 PP
2zf-C2H211.70.00078175197123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +Cg  F++   L  H r+H
  Spipo12G0024000 175 HRCDKCGLAFPTGQALGGHKRKH 197
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-6115144No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4116143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-8117142IPR007087Zinc finger, C2H2
SMARTSM003550.028117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.988117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307175197IPR007087Zinc finger, C2H2
PfamPF139121.9E-10175198IPR007087Zinc finger, C2H2
SMARTSM003550.17175197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMEAVFNLLF FANGRCYSHK TPCNFQARND RRMEDVQHFS DDGQSSNPTD STFEPEKMEM  60
CEDRDRSAET PEIPVGGDGG SGGEDQSSIF DRKGKRKNKD VEILQEPRPP SGKKMKYSCT  120
SCNKSFHTHQ ALGGHMASHK KEKQVLDGSG GGGGGEAEQA VSPTVPEVKA ATAEHRCDKC  180
GLAFPTGQAL GGHKRKHWNG HESSAFSNGA QEISSEVRYR QKLGRWERGR SSAVAPSQED  240
SSEKTEERGE LRRSWPESFN GSPTAAAAVA VVGEQNGETA APPGVIDFDL NEKPLEERES  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1943657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-16zinc-finger protein 2