PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0181900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C3H | ||||||||
Protein Properties | Length: 225aa MW: 24609.8 Da PI: 8.1803 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.6e-09 | 133 | 155 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ ++r G C++Gd C FaHg Spipo0G0181900 133 SACQEYRREGSCPRGDACGFAHG 155 67********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.14E-6 | 128 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-4 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.53 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-7 | 133 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-6 | 134 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGPACTPHQR ELFYRKKRLL LLDLHLPPRR QHLLQSPMSP SPSSPSSPPA PPGGDQAAAA 60 AEEDAARGGG GCEHAQDSPS GGDGCACDEF RMYAFKVRPC ARGRGHDWTS CPFAHSGEKA 120 RRRDPRLFRY SGSACQEYRR EGSCPRGDAC GFAHGVFECW LHPERYRTMP CRDGRACCRK 180 DGRCNHATFH GVAGGGTVWP DLGWVEELVM LLGPLNRLMS CLES* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943958.1 | 9e-48 | zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | O82307 | 6e-46 | C3H23_ARATH; Zinc finger CCCH domain-containing protein 23 | ||||
TrEMBL | A0A444BXC2 | 6e-46 | A0A444BXC2_ENSVE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25900.2 | 1e-47 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0181900 |
Publications ? help Back to Top | |||
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