PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0100800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | WRKY | ||||||||
Protein Properties | Length: 296aa MW: 31481.7 Da PI: 5.619 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.6 | 5.4e-33 | 156 | 213 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts+ C vkk+vers++dp+vv++tYeg+H+h Spipo0G0100800 156 EDGYRWRKYGQKAVKNSPYPRSYYRCTSSMCGVKKRVERSSDDPTVVVTTYEGQHTHA 213 8********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-34 | 140 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-28 | 147 | 215 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.491 | 150 | 215 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-39 | 155 | 214 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 156 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MENTAVVFGI SEEEDMKNPS SLSGFLELLG QHDFSSSLWE FPLASSLPQR SLPSIALPAA 60 PQESPEMANF PATPNSCSVS SSSTEAVNDA DHARSAATAA DAGEEVSELE EKPMSGPTAK 120 PKSAAKGGGG GKKAGQKRQR EPRFAFVTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR 180 CTSSMCGVKK RVERSSDDPT VVVTTYEGQH THACPDQQQP AELTFFNGGL PSAPHLLEGI 240 VGGGSGDSRH VVYGVGQQFS NQTAAAAGGG GGGGDISVRD YGLLQDLVPH DYVRKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-28 | 148 | 215 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-28 | 148 | 215 | 10 | 77 | Probable WRKY transcription factor 4 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100833 | 2e-47 | FP100833.1 Phyllostachys edulis cDNA clone: bphyem102p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921433.1 | 2e-66 | probable WRKY transcription factor 48 | ||||
Refseq | XP_029120413.1 | 2e-66 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A2H3XB96 | 6e-65 | A0A2H3XB96_PHODC; LOW QUALITY PROTEIN: probable WRKY transcription factor 48 | ||||
STRING | XP_008781154.1 | 1e-65 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 2e-44 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0100800 |