PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0100800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 296aa    MW: 31481.7 Da    PI: 5.619
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0100800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.4e-33156213259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCts+ C vkk+vers++dp+vv++tYeg+H+h 
  Spipo0G0100800 156 EDGYRWRKYGQKAVKNSPYPRSYYRCTSSMCGVKKRVERSSDDPTVVVTTYEGQHTHA 213
                     8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-34140215IPR003657WRKY domain
SuperFamilySSF1182901.83E-28147215IPR003657WRKY domain
PROSITE profilePS5081131.491150215IPR003657WRKY domain
SMARTSM007748.5E-39155214IPR003657WRKY domain
PfamPF031061.2E-26156212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MENTAVVFGI SEEEDMKNPS SLSGFLELLG QHDFSSSLWE FPLASSLPQR SLPSIALPAA  60
PQESPEMANF PATPNSCSVS SSSTEAVNDA DHARSAATAA DAGEEVSELE EKPMSGPTAK  120
PKSAAKGGGG GKKAGQKRQR EPRFAFVTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR  180
CTSSMCGVKK RVERSSDDPT VVVTTYEGQH THACPDQQQP AELTFFNGGL PSAPHLLEGI  240
VGGGSGDSRH VVYGVGQQFS NQTAAAAGGG GGGGDISVRD YGLLQDLVPH DYVRKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-281482151077Probable WRKY transcription factor 4
2lex_A2e-281482151077Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008332e-47FP100833.1 Phyllostachys edulis cDNA clone: bphyem102p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921433.12e-66probable WRKY transcription factor 48
RefseqXP_029120413.12e-66probable WRKY transcription factor 48
TrEMBLA0A2H3XB966e-65A0A2H3XB96_PHODC; LOW QUALITY PROTEIN: probable WRKY transcription factor 48
STRINGXP_008781154.11e-65(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-44WRKY DNA-binding protein 23