PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g001380.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 445aa MW: 46418.2 Da PI: 6.7258

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g001380.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	268	313	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Sopen07g001380.1 268 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 313 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-17	261	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.10E-13	261	317	No hit	No description
PROSITE profile	PS50888	17.39	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	265	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	268	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MQAMNSLLSQ QQQSQISLQD LQNGGNGGST GGVGGLSQHS MGHSHFDPTS SHDDFLEQIL 60 SSVPSSSPWP DLSKSWDPHH HLSSPPHNPS SGEDQPPSNP FHSQFHYDDQ ASSLLASKLR 120 QHQITSGGGA AAAAKALMLQ QQLLLSRTLA GNGLRSPNGA SGDNGLLSLP LNLSNGDQND 180 SVANPTNDNS VQALFNGFTG SLGQTSNQPQ HFHHPQGGSM QSQSFGAPAM NQTPAASGSA 240 GGGGGSTPAA QPKQQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS 300 MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSSE GRGEGNVGRG GNGRASSSNN 360 ETMTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTSTRISNN PLLAPEAGGS 420 TSPTLSALTV QSATAGKDAT SISET

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MQAMNSLLSQ QQQSQISLQD LQNGGNGGST GGVGGLSQHS MGHSHFDPTS SHDDFLEQIL  60
SSVPSSSPWP DLSKSWDPHH HLSSPPHNPS SGEDQPPSNP FHSQFHYDDQ ASSLLASKLR  120
QHQITSGGGA AAAAKALMLQ QQLLLSRTLA GNGLRSPNGA SGDNGLLSLP LNLSNGDQND  180
SVANPTNDNS VQALFNGFTG SLGQTSNQPQ HFHHPQGGSM QSQSFGAPAM NQTPAASGSA  240
GGGGGSTPAA QPKQQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS  300
MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSSE GRGEGNVGRG GNGRASSSNN  360
ETMTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTSTRISNN PLLAPEAGGS  420
TSPTLSALTV QSATAGKDAT SISET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	277	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015080472.1	0.0	transcription factor bHLH82
Swissprot	Q9ZUG9	3e-84	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0V0I6Q3	0.0	A0A0V0I6Q3_SOLCH; Putative transcription factor bHLH66-like
TrEMBL	A0A3Q7H687	0.0	A0A3Q7H687_SOLLC; Uncharacterized protein
STRING	Solyc07g005400.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-60	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]