PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G252600.1.p
Common NameSb04g029210, SORBIDRAFT_04g029210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 170aa    MW: 19640.9 Da    PI: 7.2342
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G252600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.43.2e-1379132457
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                            +r rr+++NRe+ArrsR RK++++ eL   v  L + N++L ++l++    ++
  Sobic.004G252600.1.p  79 ERRKRRMISNRESARRSRMRKQKQLSELWAQVVHLRSTNRQLLDQLNHVIRDCD 132
                           689****************************************99999877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-1476140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.86478141IPR004827Basic-leucine zipper domain
PfamPF001702.2E-1078130IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.98E-1280129No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-1080153No hitNo description
CDDcd147024.19E-1681132No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MYPAEIASVP YLSPASAASF KPHYHVATDD FLYQYSNLML PHPSSYQDVA HLVLEASFPV  60
GNKSNSEESD DYQRSLAEER RKRRMISNRE SARRSRMRKQ KQLSELWAQV VHLRSTNRQL  120
LDQLNHVIRD CDRVQHENSQ LRDEQTKLQQ QLEKLPLETT ESGVMSPDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179100RRKRRMISNRESARRSRMRKQK
29299RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G252600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1854721e-114AC185472.4 Zea mays BAC clone CH201-257N23 from chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454348.11e-122basic leucine zipper 43
TrEMBLC5XZF01e-121C5XZF0_SORBI; Uncharacterized protein
STRINGSb04g029210.11e-122(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.16e-24basic leucine-zipper 42