PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G214400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 471aa    MW: 46894.6 Da    PI: 6.9707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G214400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.6e-12252297555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Sevir.2G214400.1.p 252 HSIAERLRRERIAERMKALQELVPNA-----NKADKASMLDEIIDYVKFLQ 297
                         99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.27E-13245301No hitNo description
SuperFamilySSF474591.2E-16245307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.136247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16249306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-9252297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-13253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MQPTTREMQA MAAAGQISLD DLRAAAGSAG GVHDDFLDQM LGGLPPSAWP ELASAAGAKV  60
PEGGAQAEGM QQHQHQQFGG GLYDESALLA SRLRQHQISG GPGGGESAAA AKQMVLQQLA  120
DLRQGHHMLL QGMGRSTGGG GDGGLLLPLS LGSGGSGGDV QALLKAAANS AGGEAGGVFG  180
GAFAGSLQQQ QHQHFQHHPQ QTAPLPGQGF GGGGGGASAG ASQPQAGASG GGAAAPPRQR  240
VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKA DKASMLDEII DYVKFLQLQV  300
KVLSMSRLGG AAAVAPLVAD MSSEGRGGAP AAAGSDGLAV TEQQVAKLME EDMGTAMQYL  360
QGKGLCLMPV SLATAISSAT CHMRPPVGAA GPAGLGVAAA AHHMAAMRLP PGMNGSGGAE  420
SAAAVPASPS MSVLTAQSAM ANGAGGADGE GSHSQQQQQH PKDAASVSKP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G214400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620760.0BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956830.10.0glycine, alanine and asparagine-rich protein
SwissprotQ9ZUG91e-78BH066_ARATH; Transcription factor bHLH66
TrEMBLK3ZSX80.0K3ZSX8_SETIT; Uncharacterized protein
STRINGSi029708m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-47LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]