PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05661.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 295aa    MW: 33343.6 Da    PI: 4.4099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05661.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.67.8e-12241051396
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               + + lp +f +   ++++ +k +tl++  g+ W++ l+   + g+    yvl +GWk+ +k+  L +g ++ F++dg+++f++  
  Rsa1.0_05661.1_g00001.1  24 GDDMELPVSFNS--FLPTPLPKYVTLKSIYGKIWKMALRR--CVGEvergYVLLNGWKRIAKDESLTSGNVLEFEFDGSQCFKF-- 103
                              566888999863..35677999****************55..44444456***************************9999954.. PP

                              EE CS
                       B3  95 kv 96 
                               +
  Rsa1.0_05661.1_g00001.1 104 CI 105
                              44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-147107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-188107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.53312109IPR003340B3 DNA binding domain
CDDcd100172.08E-1212106No hitNo description
SMARTSM010195.7E-1114109IPR003340B3 DNA binding domain
PfamPF023621.3E-923105IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-9192288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-7193285IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKPVTPSEDS LPKFFRVYMP GISGDDMELP VSFNSFLPTP LPKYVTLKSI YGKIWKMALR  60
RCVGEVERGY VLLNGWKRIA KDESLTSGNV LEFEFDGSQC FKFCIYESPT MCKRLARTSV  120
QSEEETEEAD DVLVLSDDDD DDDDSQDADY NCADDDNDDV ILDDDEDAVA LDGSDDDDTE  180
ANHDDERRYL DDRSNAFFPV TINPKKISQL RIPTKVIKDF GLNFSESITL IDPLVKKFGK  240
LPTKIKIQTN NSVFIKGYGA VIRRNGLTSA DKMICELKKA GSNNMVHTIK FHIIK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05661.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464889.10.0PREDICTED: B3 domain-containing protein At5g60130-like isoform X2
SwissprotQ9LVG15e-98Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A3P6D7E91e-128A0A3P6D7E9_BRAOL; Uncharacterized protein
STRINGBo2g025080.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.22e-93B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]