PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00347g01020.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 434aa    MW: 44965.8 Da    PI: 6.6302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00347g01020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11245290555
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Peaxi162Scf00347g01020.1 245 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 290
                               99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17238300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-13238294No hitNo description
PROSITE profilePS5088817.409240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16242299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-9245290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MQAAMNSLLS QQQMSLQELE TNNGAGSSSS SGQHLFDPTH DDFLEQILSS VPSSSPWPDL  60
SKPWDPHHHL TNPSSGDDQS PFHFDDQSTS LLASKLRQHQ ITSGGAAAKA LLLQQQLLLS  120
RTLAGNGGLR SPTGASAGGN GLLPLPLSLG NGDQNDGVAN PANDSSVQAL FNGFTSGSLG  180
QTSNQHQHFH HPQGGSMQAQ SFGAPAMNQT PAASGSAGGG GTTAPAAQPK QQRVRARRGQ  240
ATDPHSIAER LRRERIAERM KALQELVPNG NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR  300
LGGAAAVAPL VADMSSEGRG EGNGGRGANG TASSSNNDTM TVTEHQVAKL MEEDMGSAMQ  360
YLQGKGLCLM PISLATAIST ATCHSRNPMS LLSNGGNNPL LAATNGGGEA GGPSSPNLSV  420
LSVQSATIKE ANSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4442220.0DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343666.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG91e-90BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0V0I6Q30.0A0A0V0I6Q3_SOLCH; Putative transcription factor bHLH66-like
STRINGPGSC0003DMT4000289170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-67LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]