PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG050200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 306aa    MW: 32173.1 Da    PI: 4.6289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG050200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1990140155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+++AeIrdp++     r++lg+f+taeeAa+ ++  +++l+g
  Pavir.4KG050200.1.p  90 TRYRGVRRRP-WGKYAAEIRDPYK---GERIWLGTFDTAEEAARKYDSEARRLRG 140
                          68********.**********865...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.00E-2990150No hitNo description
PfamPF008472.2E-1190140IPR001471AP2/ERF domain
PROSITE profilePS5103222.74891148IPR001471AP2/ERF domain
SMARTSM003801.5E-3291154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2991149IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2191148IPR016177DNA-binding domain
PRINTSPR003671.1E-1092103IPR001471AP2/ERF domain
PRINTSPR003671.1E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNQEPVPEPT TIRKLVRVLW DDRDATDSSG DEAGAAGAAP RGVRKFVREI RVVEHRAPCK  60
VITPAPAPAG RVAASGGGKR KSPGVPAAET RYRGVRRRPW GKYAAEIRDP YKGERIWLGT  120
FDTAEEAARK YDSEARRLRG PSATTNFSEA PPTPVLAPPS PRAIPAARLG VADISSAEES  180
SDESQLLGSP VSVLRAMPGE TDAAAAPLAL KPTTDAADST AKEEPSPISA DALLPQLDEE  240
VFPLPGIITA PFGDPALGVM FEDHAAPRLD HLAGDAALDL GDLPLWPDAG GCCFSDIGDD  300
FFAAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2284147771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG050200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276772e-65KJ727677.1 Zea mays clone pUT5604 AP2-EREBP transcription factor (EREB135) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813270.11e-160ethylene-responsive transcription factor ERF037-like
TrEMBLA0A2S3HLM71e-163A0A2S3HLM7_9POAL; Uncharacterized protein
STRINGPavir.Db02131.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-26erf domain protein 9