PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21300.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 323aa    MW: 35616.2 Da    PI: 10.6245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21300.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY802.5e-25274323351
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEE CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveit 51 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++t
  PK21300.1 274 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVT 323
                99************************988*****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.2E-18224270IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-26260323IPR003657WRKY domain
PROSITE profilePS5081126.004267323IPR003657WRKY domain
SuperFamilySSF1182901.83E-21269323IPR003657WRKY domain
SMARTSM007744.3E-25272323IPR003657WRKY domain
PfamPF031068.7E-21274323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAVDFMGYRN EKKNNNNFSS KLEESAAVKE AAAGLESVEK LILLLSQSQS KTPQFHNTIK  60
NHHSSSSSSM EIGMDCQAVA DVAVSKFRRV ISLLGRTRTG HARFRRAPLP PQHNNNNTEP  120
SRVYYATPIQ QIPPPDQNAV VLPITKKENT STTTTTTINF SNTTTTSFLS SVTGDSDTKS  180
HHHHHHHHSH NHNKPSSSSP GFQITNLSQI SSVGKPPIST SSLKRKCSSE NLGSGKCTSG  240
SSGRCHCSKK RKLRLKRVVR VPAISLKMAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS  300
VRGCPARKHV ERALDDPSML VVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-15260323264WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205552.11e-147probable WRKY transcription factor 7
SwissprotO221761e-84WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A2P5D1L71e-152A0A2P5D1L7_TREOI; WRKY domain containing protein
STRINGEMJ067511e-146(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-53WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]