PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2007040.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 229aa    MW: 24773.4 Da    PI: 8.8126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2007040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-202877255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++ a+++++g
  Lj6g3v2007040.1 28 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDTAAREFRG 77
                     69*******.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-322885IPR001471AP2/ERF domain
PfamPF008471.2E-132877IPR001471AP2/ERF domain
CDDcd000182.28E-302885No hitNo description
PROSITE profilePS5103223.962885IPR001471AP2/ERF domain
SMARTSM003804.0E-402891IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-222886IPR016177DNA-binding domain
PRINTSPR003674.6E-112940IPR001471AP2/ERF domain
PRINTSPR003674.6E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAPRDKTNAV KVSGNGNGNG NGGVKEVHFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAARAYDT AAREFRGPKA KTNFPFPSDN VKNQSPSQSS TVESSSRDRD VAAAADSSSL  120
DLNLAPSVRF PFRPQFPQMP AANQVLFFDA ILRAGMVGGS PASQRYGFDF HTYNHPVAAS  180
EIQAVAGAQS DSDSSSVIDL NHYESGVVIK AGGRNFDLDL NYPPMEDMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-212586264ATERF1
3gcc_A8e-212586264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.3980.0floral bud| flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, in cultured cells and at low levels in buds and leaves. Highly expressed in cell culture, especially during the exponential phase. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2007040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064120.0AP006412.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT29C05, TM0301c, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329371.13e-86ethylene-responsive transcription factor 4
SwissprotQ404771e-49ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A140WWF91e-167A0A140WWF9_LOTCO; AP2/ERF
STRINGXP_004485813.11e-81(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-27erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]