PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P02790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 447aa    MW: 50454.1 Da    PI: 8.4991
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P02790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-111335527
                           --SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                            C +++rtG+C yG++CkF+H+p
  GSMUA_Achr7P02790_001 13 DCAYYLRTGICGYGANCKFNHPP 35
                           7********************97 PP
2zf-CCCH21.25.2e-075882327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           +++C+ff+  G Ck+ ++C FaH++
  GSMUA_Achr7P02790_001 58 RKECKFFLMPGGCKFRNSCMFAHSQ 82
                           789********************97 PP
3zf-CCCH30.65.9e-10103126326
                            S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            +++C++++rtG Ck+ ++C F+H+
  GSMUA_Achr7P02790_001 103 EKECPYYMRTGSCKFSSNCWFNHP 126
                            689********************9 PP
4zf-CCCH30.37.4e-10270296127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C++f++tG Ck+ + CkF+H++
  GSMUA_Achr7P02790_001 270 PGQPECPYFMKTGDCKFKSACKFHHPR 296
                            5789*********************96 PP
5zf-CCCH35.91.2e-11317342227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            +++ C f++r G+CkyG+ CkF H++
  GSMUA_Achr7P02790_001 317 DQPVCAFYSRLGICKYGPACKFDHPM 342
                            6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-5835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291836IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-51234IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-91335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-41433IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1415583IPR000571Zinc finger, CCCH-type
SMARTSM003560.125782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-55884IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-56183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033100128IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5101128IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-8103126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464269297IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4269296IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7271296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5272299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4275297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122315343IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6315342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5317343IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-9317342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4320340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGISYPQRPG QLDCAYYLRT GICGYGANCK FNHPPRIRLT QQPISMEEKE EFPEKAGRKE  60
CKFFLMPGGC KFRNSCMFAH SQQKPEVSGI RLNFLGLPIR TGEKECPYYM RTGSCKFSSN  120
CWFNHPDPTV VTAQDCVLEY QNGGSPKRHA SAEMNMPNHI HSFNQTVTHL DSLPSYIPSF  180
VPPPKGFNFN PNLRSQRIVF YSSVNLDTGR MVSVIYPSQW LKKDQCYIIF LNSYPSFPSS  240
RNIQQPLCAI SISNTSAIQQ QGDMVYPERP GQPECPYFMK TGDCKFKSAC KFHHPRSRLT  300
GISSCNISPL GLPLRPDQPV CAFYSRLGIC KYGPACKFDH PMDFASSASP TGRSGEVSDF  360
TTERPPALVF FVLQQQLSCY IYIFYFFLSV FVLYIKPCCR YVASTLEFVS FVGTSTAGAG  420
YFFLKAEMEY LVISAFPVMT VDMGFAI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408338.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2
RefseqXP_009408339.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X3
TrEMBLM0TE690.0M0TE69_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P02790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.17e-79C3H family protein