PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G003944_P01 | ||||||||
Common Name | LOC100382180, TCP2, ZEAMMB73_532685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 387aa MW: 40760 Da PI: 9.78 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.8 | 1.8e-42 | 107 | 229 | 1 | 120 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas..nsssgk 89 aag k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s+a+ ++ss++ GRMZM2G003944_P01 107 AAGSKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAAGasHPSSAS 198 5899******************************************************************9998677776666622444445 PP TCP 90 aaksaakskksqksaasalnlakesrakara 120 +a + ++ ++q++ a++l ++++ +++++ GRMZM2G003944_P01 199 RAVAFHHLPPPQHEVAAMLGWNHHHPHQQQQ 229 5555557777778888788777755533322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.349 | 114 | 168 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.5E-37 | 114 | 259 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MDAPSSSTST STNSSRSASE QQHHHQQQQQ RYHHHHQAAG HQPFYYAAAS AAGMAQFMGS 60 RAIAPAVPVD VQLAQQQQQS SAAAAAAPAG SSGAAADKTK AVVPAAAAGS KRPTKDRHTK 120 VEGRGRRIRM PALCAARVFQ LTRELGHKTD GETIEWLLQQ AEPAIVAATG TGTIPANFSS 180 LAVSLRSAAG ASHPSSASRA VAFHHLPPPQ HEVAAMLGWN HHHPHQQQQQ QLLPPPPQQQ 240 APQDPGAGEF MRKRYREGDD DLFKDPAARQ HHPDGGDAEE HKARVTPATA MWAVAPNSAG 300 AGAFWMQPTW AFGGGGSTVQ APLQFMSTRS ANNFPAGTTM DANIGMLAAL NASGGVQQQD 360 EGQTREMAQR HRGANGGDAG RGAASPQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G003944 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00614 | PBM | Transfer from AT1G35560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G003944_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726897 | 0.0 | KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450404.1 | 1e-136 | transcription factor PCF3 | ||||
Swissprot | Q53PH2 | 1e-84 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | K7U8N6 | 0.0 | K7U8N6_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G003944_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 | Representative plant | OGRP4591 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-47 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G003944_P01 |
Entrez Gene | 100382180 |