PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g15180

Common Name

GSCOC_T00030868001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 448aa MW: 46370.7 Da PI: 6.9298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g15180	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.2e-12	231	276	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cc06_g15180 231 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 276 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-17	224	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.14E-13	224	280	No hit	No description
PROSITE profile	PS50888	17.39	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-16	228	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	231	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MQAMNSLLNQ QLHDLQNGQQ QQHHHHFDST TSSHDDFLEQ MLSSISTASW PAPDLIKTQP 60 PWDPLSQTPL GSLEDQSVLL ANKLRQHQIG GAKALMLHQQ LMLPRGLAGN GLRSPPGPNG 120 GLLAMPPLNL AGNGDQNEVI VDGSPFKSAN PGNDASVQAL YNGFTGQAST QPQHFHHPQG 180 GAMQAQNFGA QAMNQAAASG SMGTAGGGGT AAAQPRQQRV RARRGQATDP HSIAERLRRE 240 RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA VAPLAADMSS 300 EGGGDCGNGR SSNGTQTASS SNNNNNDGMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP 360 ISLATAISTA TCHSRNPMHP GLTGNGANNP LLGLGGGASG NGVGEAGGPS SPSMSVLTVQ 420 SATMVNGGGG PGGEPSSVKD AASVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MQAMNSLLNQ QLHDLQNGQQ QQHHHHFDST TSSHDDFLEQ MLSSISTASW PAPDLIKTQP  60
PWDPLSQTPL GSLEDQSVLL ANKLRQHQIG GAKALMLHQQ LMLPRGLAGN GLRSPPGPNG  120
GLLAMPPLNL AGNGDQNEVI VDGSPFKSAN PGNDASVQAL YNGFTGQAST QPQHFHHPQG  180
GAMQAQNFGA QAMNQAAASG SMGTAGGGGT AAAQPRQQRV RARRGQATDP HSIAERLRRE  240
RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA VAPLAADMSS  300
EGGGDCGNGR SSNGTQTASS SNNNNNDGMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP  360
ISLATAISTA TCHSRNPMHP GLTGNGANNP LLGLGGGASG NGVGEAGGPS SPSMSVLTVQ  420
SATMVNGGGG PGGEPSSVKD AASVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	240	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027067899.1	0.0	transcription factor bHLH66-like
Swissprot	Q9ZUG9	3e-95	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A068UPR8	0.0	A0A068UPR8_COFCA; Uncharacterized protein
STRING	VIT_11s0037g00040.t01	1e-149	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-64	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]