PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1317s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 339aa    MW: 38629.2 Da    PI: 4.1777
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1317s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.7e-14511261896
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +p +f++    +++ + t+t+++ sg  W++++  rk+sg+   +vl +GWk  vk+ +Lk gDf+ F++dg++ f  ++ +
  Cagra.1317s0003.1.p  51 IPISFTRFL--PEPFPETVTVRSISGSLWTLQF--RKCSGEverFVLVDGWKMIVKDEDLKGGDFLGFEFDGSQLF--NFCI 126
                          788888555..466889****************..888887778*************************9986666..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1419129IPR015300DNA-binding pseudobarrel domain
CDDcd100174.71E-1522127No hitNo description
SMARTSM010197.9E-924130IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-1546129IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1150128IPR003340B3 DNA binding domain
PROSITE profilePS5086312.04151130IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-11233337IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-8233336IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MYHMFSLGFF FGTGSCVDAR LPKFFKVYLP DESGDDLISL WLRLLHGFQE IPISFTRFLP  60
EPFPETVTVR SISGSLWTLQ FRKCSGEVER FVLVDGWKMI VKDEDLKGGD FLGFEFDGSQ  120
LFNFCIYERE TMCKRLRHCS EQSEELIVES DIEEGTQDSD DDDVSALDDD SEDSDYNYIE  180
DYDSDAALEE EDNDGDETDI YVVNDAATEE NDVDVEAFKL GDDASDDDRK HLDDPENPSF  240
TLRLNPKKKS QLLIPARVIN DYGLHFPESI TLVDPLVKKF GTLEKLIKIQ TNGSVFVKGF  300
GSIIRRNKVK TTDKMICEME KTGDNNMVQT MKIHIIRG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1317s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0567301e-101DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638315.10.0B3 domain-containing protein At5g60130
SwissprotQ9LVG11e-128Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLR0GU010.0R0GU01_9BRAS; Uncharacterized protein
STRINGCagra.1317s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.21e-125B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]