PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g18370

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 375aa MW: 38996.8 Da PI: 6.8894

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g18370	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	178	223	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq CA09g18370 178 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 223 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.53E-12	171	227	No hit	No description
SuperFamily	SSF47459	9.95E-17	171	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.193	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-16	175	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-9	178	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MNSSSFHSSG ENGGSSTEHD DFLQQILSSV PSSSSPWPDI GDAHPYNFDN DHHHHNSSLL 60 ASKLRQQQIN GKALMLQQQL LMSRGLTGDQ NDDALNQGNE ISVQALYNGF AGSLGQTSNQ 120 SQHFHHSQTQ SFGAPASLTT NQTPAVXAVS GGSAGGGGGA QPKQQKVRAR RGQATDPHSI 180 AERLRRERIA ERMKSLQELV PNANKTDKAS MLDEIIDYVR FLQLQVKVLS MSRLGGAAAV 240 APLVADRSSE GGGDCVQANV ARGISNGTTS STNNDNTMTM TEHQVAKLME EDMGSAMQYL 300 QGKGLCLMPI SLASAISTAT CHSMKPNNHS LLLGRGGGGG GVVNGGGGEN GGGPSSPTLS 360 ASTVQSATMG NGGT*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MNSSSFHSSG ENGGSSTEHD DFLQQILSSV PSSSSPWPDI GDAHPYNFDN DHHHHNSSLL  60
ASKLRQQQIN GKALMLQQQL LMSRGLTGDQ NDDALNQGNE ISVQALYNGF AGSLGQTSNQ  120
SQHFHHSQTQ SFGAPASLTT NQTPAVXAVS GGSAGGGGGA QPKQQKVRAR RGQATDPHSI  180
AERLRRERIA ERMKSLQELV PNANKTDKAS MLDEIIDYVR FLQLQVKVLS MSRLGGAAAV  240
APLVADRSSE GGGDCVQANV ARGISNGTTS STNNDNTMTM TEHQVAKLME EDMGSAMQYL  300
QGKGLCLMPI SLASAISTAT CHSMKPNNHS LLLGRGGGGG GVVNGGGGEN GGGPSSPTLS  360
ASTVQSATMG NGGT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	2e-57	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016540242.1	0.0	PREDICTED: transcription factor bHLH66
Swissprot	Q9ZUG9	8e-94	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1U8DZ00	0.0	A0A1U8DZ00_CAPAN; transcription factor bHLH66
STRING	Solyc12g010170.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-56	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]