PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G126200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 446aa MW: 45194.7 Da PI: 6.8942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8e-12 | 252 | 297 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Brast05G126200.2.p 252 HSIAERLRRERIAERMKALQELVPNA-----NKTDKATMLDEIIDYVKFLQ 297 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.43E-13 | 245 | 301 | No hit | No description |
SuperFamily | SSF47459 | 7.2E-17 | 245 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.174 | 247 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 249 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 252 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MQPTTREMQA MAAAAAGAGQ ISMDDLRNGH AGAGANGGGV HDDFLDQMFG SLPPSAWHEL 60 AAASAKPPED EGMQQQQQFG GPYDESVMLA SRLRQHQISG GGPGSAGAAK QMVLQQLADL 120 RHGHGHHMVL QGMGRSPSAG GGDSGMLLPL TLGNGGSGGD VQALLKAAAN SAGGEAAGVF 180 GGFAGSLQQQ QHFQPHPQQT APMPSQTFGG GPASGGGAQP QAGAGGGGGG GAQAAPPRQR 240 VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKATMLDEII DYVKFLQLQV 300 KVLSMSRLGG AAAVAPLVAD MSSEGRGGAG NGGPAESDSL TVTEQQVAKL MEEDMGAAMQ 360 YLQGKGLCLM PVSLASAISS ATCQLRPPSG PAFPQHLNNA AAMRQMHDAV PASPSMSVLT 420 AQSAMAPNGG AEASHPKDAA SVSKP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 261 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G126200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062076 | 1e-135 | BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds. | |||
GenBank | KJ727938 | 1e-135 | KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238169.1 | 0.0 | transcription factor bHLH66 isoform X2 | ||||
TrEMBL | A0A0Q3PLG9 | 0.0 | A0A0Q3PLG9_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G30350.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 7e-48 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G126200.2.p |