PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G126200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 447aa    MW: 45322.8 Da    PI: 6.8942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G126200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-12253298555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Brast05G126200.1.p 253 HSIAERLRRERIAERMKALQELVPNA-----NKTDKATMLDEIIDYVKFLQ 298
                         99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17246308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-13246302No hitNo description
PROSITE profilePS5088817.174248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16250307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MQPTTREMQA MAAAAAGAGQ ISMDDLRNGH AGAGANGGGV HDDFLDQMFG SLPPSAWHEL  60
AAASAKPPED EGMQQQQQFG GPYDESVMLA SRLRQHQISG GGPGSAGAAK QMVLQQLADL  120
RHGHGHHMVL QGMGRSPSAG GGDSGMLLPL TLGNGGSGGD VQALLKAAAN SAGGEAAGVF  180
GGFAGSLQQQ QHFQPHPQQQ TAPMPSQTFG GGPASGGGAQ PQAGAGGGGG GGAQAAPPRQ  240
RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKATMLDEI IDYVKFLQLQ  300
VKVLSMSRLG GAAAVAPLVA DMSSEGRGGA GNGGPAESDS LTVTEQQVAK LMEEDMGAAM  360
QYLQGKGLCL MPVSLASAIS SATCQLRPPS GPAFPQHLNN AAAMRQMHDA VPASPSMSVL  420
TAQSAMAPNG GAEASHPKDA ASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257262RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G126200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620761e-135BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279381e-135KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238169.10.0transcription factor bHLH66 isoform X2
TrEMBLA0A0Q3PLG90.0A0A0Q3PLG9_BRADI; Uncharacterized protein
STRINGBRADI4G30350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-48LJRHL1-like 1