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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G11487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 385aa MW: 43494.3 Da PI: 5.6178 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.9 | 1.2e-08 | 104 | 137 | 1 | 37 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 s+y+GV +++ +grW+A+I + g +k+ +lg++ Ro07_G11487 104 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYS 137 89****99**********99966...3.6*******95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence |
MHKLKRRRRQ KKLNLQRGHQ AQMDGKSSWN DIQKKKGRQG AYDSEDAAAH TYDLAALKYW 60 GPGTILNFPI ETYTKEIGEM QKVSKEEYLA SLRRRSSGFS RGVSKYRGVA RHHHNGRWEA 120 RIGRVFGNKY LYLGTYSMIR FQSKPFEKGQ ASGSHVSYCS ARGFLLVSQV IHILDTQEEA 180 AAAYDMAAIE YRGTNAVTNF DISNYIDRIK SEEPQDPPPQ CSDVAQEEVE VKQEVHQFQP 240 QPQEQQEQQE REQNKEQILF SPKLQYPHVA PCIESSTTTM QDVMDPTNEH QCQFNWNFLD 300 TLLSVPDIPL DNKPSELPDF FEDLGFEENF DMIFGGASDV NLNGLLDTAP CGVQAGVPTN 360 LDDDGSSSSP SPSSTTTSVS CNYSV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 11 | LKRRRRQK |
2 | 6 | 36 | RRRRQKKLNLQRGHQAQMDGKSSWNDIQKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 8e-65 | AP2 family protein |