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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G08497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 384aa MW: 43900.1 Da PI: 4.7165 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.6 | 8.6e-10 | 61 | 105 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ + rW A++ k k ++g+f+t+eeAa+a++ a k++g Ro06_G08497 61 RYGENTRWQARLGKG----KDkKGLYVGTFDTEEEAARAYDIAVIKFRG 105 5556779****6663....235***********************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence |
MVHNPMSGFH EEEQAARAHD LAALKYWGDS TPLNFQVSDY MKELEEMHAY TKKDYMLHIR 60 RYGENTRWQA RLGKGKDKKG LYVGTFDTEE EAARAYDIAV IKFRGRRTVT NFDLSHYDVE 120 GILKSPNIPI GKGASKFIRW TPADDILQSR RNTKIVPVLQ QVDSSGNPNL TTIAPPYILE 180 PSQLLETPSN PNPAQQYICP SLNSNQNNDQ IQINQFLQYY NNNPNGQNHF YQNPNFPINP 240 SFNNWFNYGG NEQMEPSFQF QYILSPENHE FQFHQYNSDN FQHHLPQNPS SSGLRDSQNS 300 SSQENPNFLS ELTNLPSGSD IREFPGSQEQ EASLARMGTN EGDYTNEVDG NGNVAEDFRV 360 DKPDLDISSS SWLEMFLMTL NSSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 3e-43 | AP2 family protein |