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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G00115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 432aa MW: 49098.7 Da PI: 9.53 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.4e-16 | 80 | 139 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Ro04_G00115 80 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 139 789******************988855556447*************************98 PP | |||||||
2 | AP2 | 54.6 | 2.7e-17 | 182 | 233 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+ +++g Ro04_G00115 182 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 233 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence |
MDHQLASSVK SELMKSPRKR PICMIDVDAL VNKCVKRRRR DSSTAVSPTG HSVDQQQQKQ 60 TNHQSSTTTT TTTTTVKRSS RFRGVSRHRW TGRYEAHLWD KGSWNPTQRK KGKQVYLGAY 120 DEEESAARAY DLAALKYWGT STFTNFPVSD YEIEIDLMNT LTKEEYLASL RRRSSGFSRG 180 VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYGTQEEA AHAYDIAAIE YRGINAVTNF 240 DLSTYIRWLR PGSNSLAANS QEQPKPNIPD FNRNNPSKEE KQMSIFNPNN SFTEDIDTSR 300 TRDIFQRQST MPPISPTCTT KSSNSPTALG LLLKSSLFKE LVEKNLNDEN EESDDEKNDT 360 IKNLLPQTNG TENLKRILYE GIHNIPFSCS SNTDVLPALE SREKSMLPLC NSRGQSLWNN 420 GAMNMFSSAD FN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 40 | RKRPICMIDVDALVNKCVKRRRR |
2 | 106 | 114 | PTQRKKGKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 6e-78 | AP2 family protein |