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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G21022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | AP2 | ||||||||
Protein Properties | Length: 553aa MW: 60856.6 Da PI: 6.459 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 171 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Ro03_G21022 171 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 227 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 6e-15 | 272 | 321 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Ro03_G21022 272 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 321 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence |
MGSMNSNNWL SFPLSPTNSS LPSQLHPSHS HPFSLGLVSD TLDNPFQNQE WNMIDTQGSS 60 DVPKVADFLG VGKSENQSDL VAYNDINANE SVTNYIFPNI NNSIVPVENT VVGTSSNYDF 120 QENSNSLQSL TLSMGSGKGS STCETSTDNT STTTVEAPPR RALDTFGQRT SIYRGVTRHR 180 WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE 240 KEVEEMKNCT RQEFVASIRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 300 TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SNTLPIGGGA AKRLKEAQAL 360 ETSRKREEMM ALGSTFQYAA GSSSSASSAA RNLQAYSLMQ QQPQSAYDQT LLSLQNHDIS 420 PYTHHDPSSY QNYIQTQLQL QQQSSNSYNI HQQSQSPHQY YNTYLQSTHP ALLQGLMDMG 480 TASTTVMDNS AVGYLGHNGL GMASNSTATN GVGSAEELAL VKVDYDMPSG GYGNWSGGSV 540 QGSNPGVFTM WND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |